Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_EP300_0004100

Sequence Length

262 nt

GC Content

0.5725

GGUCAACAGCCAGCCCCGCAGGUCCAGCAGCCAGGCCUGGUGACUCCAGUUGCCCAAGGGAUGGGUUCUGGAGCACAUACAGCUGAUCCAGAGAAGCGCAAGCUCAUCCAGCAGCAGCUUGUUCUCCUUUUGCAUGCUCACAAGUGCCAGCGCCGGGAACAGGCCAAUGGGGAAGUGAGGCAGUGCAACCUUCCCCACUGUCGCACAAUGAAGAAUGUCCUAAACCACAUGACACACUGCCAGUCAGGCAAGUCUUGCCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-83.50 kcal/mol

Ensemble Metrics

Free Energy: -87.52

Frequency: 0.0015

Diversity: 40.23

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.........)))(..((((.((........))))))(((.((((((..(((((.....))))).))))))))).....((((.....((..(((....)))..))...)))).((((((((((....(((..((........))..)))..))))))))))....(((((((.(..((...))..))))))))((((..(((...((....((((........))))....)).)))))))..(((((...)))))..)

Thermodynamic Ensemble Prediction

(({,........)})(..((((,({........))))))(((.((((((..(((((.....))))).))))))))).....((((.....((..(((....)))..))...)))).(((((((({(,...(((..((......,.))..)))..)))))))))),,.{(((((((.(..((...))..))))))))),||..{{{...{{....{(((........}}}}|||..,.}}}},)},.((((,...}))))..)