Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_EP300_0008500

Sequence Length

478 nt

GC Content

0.4895

CAAUUUUGACUGGAGCACCCGUUGGACUUGGAAAUCCUAGCUCUCUAGGGGUGGGUCAACAGUCUGCCCCCAACCUAAGCACUGUUAGUCAGAUUGAUCCCAGCUCCAUAGAAAGAGCCUAUGCAGCUCUUGGACUACCCUAUCAAGUAAAUCAGAUGCCGACACAACCCCAGGUGCAAGCAAAGAACCAGCAGAAUCAGCAGCCUGGGCAGUCUCCCCAAGGCAUGCGGCCCAUGAGCAACAUGAGUGCUAGUCCUAUGGGAGUAAAUGGAGGUGUAGGAGUUCAAACGCCGAGUCUUCUUUCUGACUCAAUGUUGCAUUCAGCCAUAAAUUCUCAAAACCCAAUGAUGAGUGAAAAUGCCAGUGUGCCCUCCCUGGGUCCUAUGCCAACAGCAGCUCAACCAUCCACUACUGGAAUUCGGAAACAGUGGCACGAAGAUAUUACUCAGGAUCUUCGAAAUCAUCUUGUUCACAAACU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-121.60 kcal/mol

Ensemble Metrics

Free Energy: -130.78

Frequency: 0.0000

Diversity: 147.42

Structure Visualization

Structure Prediction

MFE Structure Prediction

((....))(.(((((((...((((((........))).)))..((((((((((((....(((((((........((((......)))).)))))))..)))).)))).))))((((((.......))))))((((((..(..(((.((...(((...((((.((....(((((((((......................))).))))))..((((.....)))).))))))...)))...)).)))..).)))))).((((((((...((..((((((((......((((..(((((........)))))..))))(((((..((.....(((((((........))).))))......)).)))))((((.....))))))))))))..))...))))..))))...((((((...........))))))..(((((((..........))))))).........))))).))...)

Thermodynamic Ensemble Prediction

{{..,,||{.(((((({{{(.{,((({(,((....}).}}.||||{||||||(((,,,.(((((((.........,.,....,})),).))))))),.)))}}))))|||}.{(((((.......)))))}((((((..,..(((.((...(((...((((.{,....(((((((((..............,.......))}|))))))..((({.....)))).))))))...)))...)).)))..).)))))).,{((((((...((,.((((({{(,...,.,|||},(((((........)))))..,|}}{{{{{,.|||||..||||||{........}}},)}}}.....|||{{,|||,{((.....}|}},},,|||,..,,,,,}}}}..}}}|{{{,,.,||}}....}}..})),)))},(((((((.,,.....,.)))))))....,,...}}}},.},...}