Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_EP300_0009500

Sequence Length

343 nt

GC Content

0.4810

AGCCUAUGCAGCUCUUGGACUACCCUAUCAAGUAAAUCAGAUGCCGACACAACCCCAGGUGCAAGCAAAGAACCAGCAGAAUCAGCAGCCUGGGCAGUCUCCCCAAGGCAUGCGGCCCAUGAGCAACAUGAGUGCUAGUCCUAUGGGAGUAAAUGGAGGUGUAGGAGUUCAAACGCCGAGUCUUCUUUCUGACUCAAUGUUGCAUUCAGCCAUAAAUUCUCAAAACGUCCAAGCCAUAUUUCCUACGCCGGAUCCUGCUGCUUUAAAAGACAGACGGAUGGAAAACCUAGUUGCAUAUGCUCGGAAAGUUGAAGGGGACAUGUAUGAAUCUGCAAACAAUCGA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-82.50 kcal/mol

Ensemble Metrics

Free Energy: -89.09

Frequency: 0.0000

Diversity: 84.46

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.(((((((((((((((((((........))).....(((((.((((....(((((((((......................))).))))))((..(((((..(((.((..((((((((.....)))).).))).)))))..)))))....))..(((((..(....)..)))))(((((........)))))..)))))))))....................)))))))........((......))((((..((((((...))).)))..))))((....)).))))))))).)))..((..(((...(((..((....))..)))...)))..))..

Thermodynamic Ensemble Prediction

(((.((((((((({({((((((,....,,,.||,..,,,,{{({{(,{{....(((((((((......................))},)))))),,,,(({{{..||||.||||||.{{||,....)})),},)}},)}))}..}))}},...||..(((((.,(....}..))}))(((((........)))))..||}}|}},,..,}.,,.............})}}}}).......|{{....,.}}{(((..((((({...})).)))..))))||....}}.))))))))).))),,({..(((,..(({..{,....,}..))).}.)))..)),.