Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_EP300_0009600

Sequence Length

350 nt

GC Content

0.4543

GUGCUAGUCCUAUGGGAGUAAAUGGAGGUGUAGGAGUUCAAACGCCGAGUCUUCUUUCUGACUCAAUGUUGCAUUCAGCCAUAAAUUCUCAAAACCCAAUGAUGAGUGAAAAUGCCAGUGUGCCCUCCCUGGGUCCUAUGCCAACAGCAGCUCAACCAUCCACUACUGGAAUUCGGAAACAGUGGCACGAAGAUAUUACUCAGGAUCUUCGAAAUCAUCUUGUUCACAAACUCGUCCAAGCCAUAUUUCCUACGCCGGAUCCUGCUGCUUUAAAAGACAGACGGAUGGAAAACCUAGUUGCAUAUGCUCGGAAAGUUGAAGGGGACAUGUAUGAAUCUGCAAACAAUCGA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-76.20 kcal/mol

Ensemble Metrics

Free Energy: -83.50

Frequency: 0.0000

Diversity: 110.13

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((..(((((....((((...((..((((((((......((((..(((((........)))))..))))(((((..((.....(((((((........))).))))......)).)))))((((.....))))))))))))..))...))))..((((((....((((.....(((((..(((((((((..........((((((..........)))))).........))))....))))).)))))....))))...(((((........)).)))..))))))....((.(((.......))).))..........)))))..)))).....((....)).....

Thermodynamic Ensemble Prediction

(({((((({{.,{{{((((...((..((((((((,.....{{{{..(((((........)))))..}}}}(((({..{{,,,..{{{((((........))},)))).....,)}.}}}}}{(((.....))))))))))))..)),,,}}}}..}}||{{...,||||..,..(({{{..{({((,(((((((.......,|.))))))).....||||||,,,...,,||.}|,|.,|}}||.|}}}|.,..}}}}{(((.,((((({...})).)))..))))}}....,,,}}},,,.,.,))|{||,.,|||,..,|}}}|,.}.,}}..,,},}.,.}..})))