Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_EP300_0009800

Sequence Length

603 nt

GC Content

0.4627

GUGCUAGUCCUAUGGGAGUAAAUGGAGGUGUAGGAGUUCAAACGCCGAGUCUUCUUUCUGACUCAAUGUUGCAUUCAGCCAUAAAUUCUCAAAACCCAAUGAUGAGUGAAAAUGCCAGUGUGCCCUCCCUGGGUCCUAUGCCAACAGCAGCUCAACCAUCCACUACUGGAAUUCGGAAACAGUGGCACGAAGAUAUUACUCAGGAUCUUCGAAAUCAUCUUGUUCACAAACUCGUCCAAGCCAUAUUUCCUACGCCGGAUCCUGCUGCUUUAAAAGACAGACGGAUGGAAAACCUAGUUGCAUAUGCUCGGAAAGUUGAAGGGGACAUGUAUGAAUCUGCAAACAAUCGAGCGGAAUACUACCACCUUCUAGCUGAGAAAAUCUAUAAGAUCCAGAAAGAACUAGAAGAAAAACGAAGGACCAGACUACAGAAGCAGAACAUGCUACCAAAUGCUGCAGGCAUGGUUCCAGUUUCCAUGAAUCCAGGGCCUAACAUGGGACAGCCGCAACCAGGAAUGACUUCUAAUGGCCCUCUACCUGACCCAAGUAUGAUCCGUGGCAGUGUGCCAAACCAGAUGAUGCCUCGAAUAACUCCACAAUCUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-141.50 kcal/mol

Ensemble Metrics

Free Energy: -153.43

Frequency: 0.0000

Diversity: 187.40

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.(((((...((((((((...((..((((((((......((((..(((((........)))))..))))(((((..((.....(((((((........))).))))......)).)))))((((.....))))))))))))..))...))))..)))).....))))).....((..(((.((.((((..(((..((((((((..(((((...((.(((.((((...((((..(((.(((.((((..((......))((((..((((((...))).)))..))))((....)).......))))))).))).))))(((((((....((((...(((((..........)))))))))..)).)))))...(((.((...(((...))))))))...)))).))).))....)))))............(((((.(((((((((..((.....))..))))).))))..))))).........((((((......((.....((.......)).....))......))))))...))))).....)))..))))))).)).))).))..))(((((..((.............))..)))))

Thermodynamic Ensemble Prediction

(((((.((((((((..((,...((({(((((((((,....,{{{..(((((........)))))..}|}}{({{{{,|,,{{..,,,,,,,........}}||)))),....{|{{{.{{|,{((....,||||,,,,{({,....}}}}}},..||,(((,...,|))}....||,.|}}.||||}(((((((..,....,,.))))))).......{{{(..,.....,,.)},},}),.,,.,})))}}}})),,{{((.,((((({...})).)))..)))}||,,..,{{{{{{.,...,||({{{..,{{{(((((((....((((...(((((..........)))))))))..)).))))).||)}|,|...,(({...}))),}},....}})))),.,.....,...((((({..{{.{,(.((((.....}}}}......,,))).,),,,)))))),.)))))},,...))))..,.})..))))))))))),....,,{(({....,|},,..{||..,{{..,,,},.,}},}},,.,}}},|||{|..,})))}.))(((((..{{.............}}..)))))