Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_EP300_0010600

Sequence Length

509 nt

GC Content

0.4695

CCCAAUGAUGAGUGAAAAUGCCAGUGUGCCCUCCCUGGGUCCUAUGCCAACAGCAGCUCAACCAUCCACUACUGGAAUUCGGAAACAGUGGCACGAAGAUAUUACUCAGGAUCUUCGAAAUCAUCUUGUUCACAAACUCGUCCAAGCCAUAUUUCCUACGCCGGAUCCUGCUGCUUUAAAAGACAGACGGAUGGAAAACCUAGUUGCAUAUGCUCGGAAAGUUGAAGGGGACAUGUAUGAAUCUGCAAACAAUCGAGCGGAAUACUACCACCUUCUAGCUGAGAAAAUCUAUAAGAUCCAGAAAGAACUAGAAGAAAAACGAAGGACCAGACUACAGAAGCAGAACAUGCUACCAAAUGCUGCAGGCAUGGUUCCAGUUUCCAUGAAUCCAGGGCCUAACAUGGGACAGCCGCAACCAGGAAUGACUUCUAAUGGCCCUCUACCUGACCCAAGUAUGAUCCGUGGCAGUGUGCCAAACCAGAUGAUGCCUCGAAUAACUCCACAAUCUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-109.60 kcal/mol

Ensemble Metrics

Free Energy: -120.62

Frequency: 0.0000

Diversity: 180.63

Structure Visualization

Structure Prediction

MFE Structure Prediction

........(((((.....((.((..(.((((.....)))).)..)).))......)))))....((((....))))....((..(((.((.((((..(((..((((((((..(((((...((.(((.((((...((((..(((.(((.((((..((......))((((..((((((...))).)))..))))((....)).......))))))).))).))))(((((((....((((...(((((..........)))))))))..)).)))))...(((.((...(((...))))))))...)))).))).))....)))))............(((((.(((((((((..((.....))..))))).))))..))))).........((((((......((.....((.......)).....))......))))))...))))).....)))..))))))).)).))).))....(((((..((.............))..)))))

Thermodynamic Ensemble Prediction

......(((,,(((....{((({.(((,{((...,{{(||.,,.(((,....|||,,,...{|,(((,...,|||,....||,,|}},|||||(((((({..,...,,|,}}}}}}}...{{{{{{,({{,....,{,.}|,{.,|||||.|}|||....}|}}{{{(,,(((((,...,)).)))..))))}}.....||||||,,,,,,|||{||,.,|{|{{{((({.,..((({...(((((..........)))))}}}}..}}.}||||,|||||.|,..,(({...})))}}},...,},))))},}.....,..,{{,,{,..,,...{,((({,..,,||||..,...,,}))..)}}})}}}})..}}}}},.,,.....|{||{{.....,((|,{{.{{.......||..,,.,)},,...))))}}...,,}}..,,..|||{.{||,|{((({...))))}....,))).))}}...,......,,)}}.)))..