Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_EP300_0011000

Sequence Length

371 nt

GC Content

0.4690

CGUCCAAGCCAUAUUUCCUACGCCGGAUCCUGCUGCUUUAAAAGACAGACGGAUGGAAAACCUAGUUGCAUAUGCUCGGAAAGUUGAAGGGGACAUGUAUGAAUCUGCAAACAAUCGAGCGGAAUACUACCACCUUCUAGCUGAGAAAAUCUAUAAGAUCCAGAAAGAACUAGAAGAAAAACGAAGGACCAGACUACAGAAGCAGAACAUGCUACCAAAUGCUGCAGGCAUGGUUCCAGUUUCCAUGAAUCCAGGGCCUAACAUGGGACAGCCGCAACCAGGAAUGACUUCUAAUGGCCCUCUACCUGACCCAAGUAUGAUCCGUGGCAGUGUGCCAAACCAGAUGAUGCCUCGAAUAACUCCACAAUCUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-75.80 kcal/mol

Ensemble Metrics

Free Energy: -83.19

Frequency: 0.0000

Diversity: 97.04

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((........(((((....(((....(((((........)).))).)))..)))))..((((((.....(((((((......(((((((....((((...(((((..........)))))))))..)).)))))...)))))...((((...)))).)).....))))))............))))((((.....(((((.(((((((((..((.....))..))))).))))..))))).........((((((......((.....((.......)).....))......)))))).............((((.(((..(((((...))))).....))).)))).................))))

Thermodynamic Ensemble Prediction

.((((........,,{((......|}{(((,,((((({...})).))).,))}}}},,...((((((.,...,|(((((..,{{{(((((((....((((...(((((..........)))))))))..)).))))).|}))}}}...,(({...})}),},,....))))))............))))((((.....({(((,{{,{{||||..{,.....})..}||}}||}}}..}}}}),.}|.....((((((.....,(({.{{.((.......))..}}.}),,,...)))))).....,}......((((.(((.,(((({...}))))...,.))).))))...,.............))))