Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_EP300_0011500

Sequence Length

501 nt

GC Content

0.5090

GCGGAAUACUACCACCUUCUAGCUGAGAAAAUCUAUAAGAUCCAGAAAGAACUAGAAGAAAAACGAAGGACCAGACUACAGAAGCAGAACAUGCUACCAAAUGCUGCAGGCAUGGUUCCAGUUUCCAUGAAUCCAGGGCCUAACAUGGGACAGCCGCAACCAGGAAUGACUUCUAAUGGCCCUCUACCUGACCCAAGUAUGAUCCGUGGCAGUGUGCCAAACCAGAUGAUGCCUCGAAUAACUCCACAAUCUGGUUUGAAUCAAUUUGGCCAGAUGAGCAUGGCCCAGCCCCCUAUUGUACCCCGGCAAACCCCUCCUCUUCAGCACCAUGGACAGUUGGCUCAACCUGGAGCUCUCAACCCGCCUAUGGGCUAUGGGCCUCGUAUGCAACAGCCUUCCAACCAGGGCCAGUUCCUUCCUCAGACUCAGUUCCCAUCACAGGGAAUGAAUGUAACAAAUAUCCCUUUGGCUCCGUCCAGCGGUCAAGCUCCAGUGUCUCAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-119.90 kcal/mol

Ensemble Metrics

Free Energy: -131.02

Frequency: 0.0000

Diversity: 143.63

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((.(((.....((((((((((.((...(((...))))))))......))))))).........((((((..((.(((.((((.....))))........))).))...)))))).))))))).(((....((((((......((.....((.......)).....))......)))))).....(((.((((...((.(((((((.....(((((((((((((..((.............))..)))))))))).........(((((........)))))..(((..............)))................)))))))))))).)))).)))((((((((((......((((...(((((...(((((............(((((......)))))...............((...((((((......))))))....))...............))))).)))))))))...)))))))).)).))).

Thermodynamic Ensemble Prediction

,.(({{,,{,.,,..((((((((({.{,..,(((...})))}}}}...,..))))))).........((({({..{{.,,(,((((,..,,||||..,.....}}}..)||,)}|}}},,}}}}},.||.....{(((((.....,((|,{{.((.......))..}}.}),,,...)))))).....{({.((({,,.{{.({{{{((.,.,,|||((((((((((..((.............)}..)))))))))).........(((((........))))).,(((..............)))...............,||,}}}})))}},}})),|},,{((((((((....,,({((..|((((({..(((||..,,.,{,,,,.(((({......)))))..}}}..........,,{{,{(((((......))))))}}.,}}..........,,..})))})})),,,))))...)))))))).)).,,..