Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_EP300_0014800

Sequence Length

557 nt

GC Content

0.5637

GCACAAAUGUCUAGUUCUUCCUGCCCGGUGAACUCUCCUAUAAUGCCUCCAGGGUCUCAGGGGAGCCACAUUCACUGUCCCCAGCUUCCUCAACCAGCUCUUCAUCAGAAUUCACCCUCGCCUGUACCUAGUCGUACCCCCACCCCUCACCAUACUCCCCCAAGCAUAGGGGCUCAGCAGCCACCAGCAACAACAAUUCCAGCCCCUGUUCCUACACCUCCUGCCAUGCCACCUGGGCCACAGUCCCAGGCUCUACAUCCCCCUCCAAGGCAGACACCUACACCACCAACAACACAACUUCCCCAACAAGUGCAGCCUUCACUUCCUGCUGCACCUUCUGCUGACCAGCCCCAGCAGCAGCCUCGCUCACAGCAGAGCACAGCAGCGUCUGUUCCUACCCCAACAGCACCGCUGCUUCCUCCGCAGCCUGCAACUCCAUUUUCAAACCAGAAGAACUACGACAGGCACUGAUGCCAACUUUGGAGGCACUUUACCGUCAGGAUCCAGAAUCCCUUCCCUUUCGUCAACCUGUGGACCCUCAGCUUUUAGGAAUCCCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-132.90 kcal/mol

Ensemble Metrics

Free Energy: -140.46

Frequency: 0.0000

Diversity: 94.75

Structure Visualization

Structure Prediction

MFE Structure Prediction

((......(((((((((((((((..(((((((...........((((((((((((..((((.(((.........(((.....((((.........))))......)))........))).)))).)))).((((((.............................(((((((((..((........))............)))))))))...........(((((.((...(((((((....).))))))...............)).)))))....................................(((((((...........)))))))((.((((((........)))))).))....((((......))))..(((((((.(((((........)))))...)))))))......(((...))).......(((((......)))))..)))))).((((....)))).....)))))))).))))))).)))))...))))).....................))))).....))....(((....)))

Thermodynamic Ensemble Prediction

(,,.....||.,,((((((((((..(((((({...........((((((((((((..{{((,(({.........,{{,,,,,((((.........))))...,,,|||........}}},||||,,|,|,(({(({...........................{.(((((((((..{{.,......}}............)))))))))...........(((((.((...(((((({....).))))))...............}}.)))))....................................(((((((...........))))))),{.{(((((........)))))|,||....((({...,,.|||}..(((((((,(((((........))))).,.)))))))..,,,.|||,,,})).......(((((......))))).,))}))),|||,,,,,))}}.})}))))))))).))))))).)))))...}))}}...................,,,})},.....,,...,|||....)))