Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_EP300_0015100

Sequence Length

444 nt

GC Content

0.4640

CUUUCCCAGCCAGCUGUAAGCAUUGAAGGACAGGUAUCAAAUCCUCCAUCUACUAGUAGCACAGAAGUGAAUUCUCAGGCCAUUGCUGAGAAGCAGCCUUCCCAGGAAGUGAAGAUGGAGGCCAAAAUGGAAGUGGAUCAACCAGAACCAGCAGAUACUCAGCCGGAGGAUAUUUCAGAGUCUAAAGUGGAAGACUGUAAAAUGGAAUCUACCGAAACAGAAGAGAGAAGCACUGAGUUAAAAACUGAAAUAAAAGAGGAGGAAGACCAGCCAAGUACUUCAGCUACCCAGUCAUCUCCGGCUCCAGGACAGUCAAAGAAAAAGAUUUUCAAACCAGAAGAACUACGACAGGCACUGAUGCCAACUUUGGAGGCACUUUACCGUCAGGAUCCAGAAUCCCUUCCCUUUCGUCAACCUGUGGACCCUCAGCUUUUAGGAAUCCCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-93.60 kcal/mol

Ensemble Metrics

Free Energy: -102.68

Frequency: 0.0000

Diversity: 119.71

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((.....(((((..........(((((((((.......(((((((((........(((....)))..(((((((.......))))))).....((((....))))...))))))))).......(((((.((((.........((.((.((...)).)).)).((((...((((.((((...((((..((((((....((((.....(((..........((((.(.((((.((......(((((.((...(.(..((....))..))...)).)))))..)).))))).))))))).))))..))))))...........(((((......))))).))))...)))).))))((((.........)))).....((....))))))...))))))))).........))))))....))))))))....)))).....

Thermodynamic Ensemble Prediction

..((((.,,..{((((..,,,..,,,,((((((((.......(((((((((.,......{,,.,,,||}..(((((((.......)))))))....|||||....},)},}.)))))))))...,,,.(((((.((((,........{{.{{.{,...|}.||{||,({,{,,,({({,((((...{{{,.,||||{{....{(({.,|,.|||.....,..,.((({.(.((((.((......(((({.{{.....({.{(....})..)}...)}.))))).,)).))))).)))))}},)}}}..}}})))........,,.(((((......))))).)),,...,|||.,}},||||..,|||||,|||......,,,}}.}},}}},},})))))))).}}}.,...))))))...,)}))))))....)))).....