Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_EP300_0015900

Sequence Length

504 nt

GC Content

0.4365

UCUAAAGUGGAAGACUGUAAAAUGGAAUCUACCGAAACAGAAGAGAGAAGCACUGAGUUAAAAACUGAAAUAAAAGAGGAGGAAGACCAGCCAAGUACUUCAGCUACCCAGUCAUCUCCGGCUCCAGGACAGUCAAAGAAAAAGAUUUUCAAACCAGAAGAACUACGACAGGCACUGAUGCCAACUUUGGAGGCACUUUACCGUCAGGAUCCAGAAUCCCUUCCCUUUCGUCAACCUGUGGACCCUCAGCUUUUAGGAAUCCCUGAUUACUUUGAUAUUGUGAAGAGCCCCAUGGAUCUUUCUACCAUUAAGAGGAAGUUAGACACUGGACAGUAUCAGGAGCCCUGGCAGUAUGUCGAUGAUAUUUGGCUUAUGUUCAAUAAUGCCUGGUUAUAUAACCGGAAAACAUCACGGGUAUACAAAUACUGCUCCAAGCUCUCUGAGGUCUUUGAACAAGAAAUUGACCCAGUGAUGCAAAGCCUUGGAUACUGUUGUGGCAGAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-110.30 kcal/mol

Ensemble Metrics

Free Energy: -119.66

Frequency: 0.0000

Diversity: 155.98

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((((....((((((....((((.....(((..........((((.(.((((.((......(((((.((...(.(..((....))..))...)).)))))..)).))))).))))))).))))..))))))........((.(((((......))))).))......((((....)))).))))))))....((((.(.((((.((..(((.((((.....(((((((((..(((.((..((((((...(((((....)))))......(((((((((........(((.(..(((..((.((.......)).))..)))..)))))))))))))(((((...((((((((.......(((((((((((((.....)))).))((((((....)))))).........)))))))....))))))))....)))))))))))((((.....))))......)))))))))).))))....)))).))))).)))).)))))

Thermodynamic Ensemble Prediction

(((,..{{,,..((((((....((({.....|{|....,,..,.((((.(.((((.((......(((((.{{.....({.((....))..))...)}.))))).,)).))))).)))))||,))))..))))))...,....{{.(((((......))))}.}}.,....((({....|)))..,,.{((.(((.(((({(.({((((,{,{{,,,............,,.....,},}})}.},,.,,...(((((....)))))...,,,})))..,)))}}).)))))),}},,(({{((.((,,.....}}.}}..}}},.||{((((((((({((,((...(((((((({{{,,,{{{..||{({{(((.....)))}.))|{{|{{.,..}}||||......}}.}))}}}},,..}))))))),,..((((.(((.((((.,{.........,..))))))).)).))...}},}},))))))))),))),})}}})