Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_EP300_0019100

Sequence Length

321 nt

GC Content

0.4517

GUAUCAUUUCUGUGAGAAGUGUUUCAAUGAGAUCCAAGGGGAGAGCGUUUCUUUGGGGGAUGACCCUUCCCAGCCUCAAACGUUUGUUGAAUGUACAGAGUGCGGAAGAAAGAUGCAUCAGAUCUGUGUCCUUCACCAUGAGAUCAUCUGGCCUGCUGGGUGACCAAGGGAGACAGCAAAAAUGCUAAAAAGAAGAAUAAUAAGAAAACCAGCAAAAAUAAGAGCAGCCUGAGUAGGGGCAACAAGAAGAAACCCGGGAUGCCCAAUGUAUCUAACGACCUCUCACAGAAACUAUAUGCCACCAUGGAGAAGCAUAAAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-76.20 kcal/mol

Ensemble Metrics

Free Energy: -82.35

Frequency: 0.0000

Diversity: 88.17

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((..(((((((((((.(((((((...)))))(((((((((.....)))))))))((.....))(((((..(((((..((((((...))))))...))).)))))))..((((((((..((((((((........))).))))).((.(((.((((((((..((...))..))((((....))))......................))))))............))).))....(((((.(..(........)..).))))).))))))))....)).)))))))))))....))))(.(.(((......)))...).)

Thermodynamic Ensemble Prediction

((((..(((((((((((.((((({{...,}}}|(((((((((.....)))))))))(({....)}|{{{{,.(((((..((((((...})))))...))).)))}}}}..((((((((....,{(((,{{{{{{{{{.,{{{.{{,,,,||.,|.}||))))},,..)))}.))||{,....}))}.......................,}||,.........}}.|{||,.....||||,.,..{......,.},,|.}}))).}))))))).,}.}).)))))))))))....))))(.,.(((......)))...}.)