Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_EP300_0019400

Sequence Length

358 nt

GC Content

0.4162

UACAAUAAAUAAAGAACAAUUUUCCAAGAGAAAAAAUGACACACUGGAUCCUGAACUGUUUGUUGAAUGUACAGAGUGCGGAAGAAAGAUGCAUCAGAUCUGUGUCCUUCACCAUGAGAUCAUCUGGCCUGCUGGAUUCGUCUGUGAUGGCUGUUUAAAGAAAAGUGCACGAACUAGGAAAGAAAAUAAGUUUUCUGCUAAAAGGCAUAUUUGGGCAUGUCCACCAAGUGAGGGAGAUGAUUAUAUCUUCCAUUGCCAUCCUCCUGACCAGAAGAUACCCAAGCCCAAGCGACUGCAGGAAUGGUACAAAAAAAUGCUUGACAAGGCUGUAUCAGAGCGUAUUGUCCAUGACUACAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-68.00 kcal/mol

Ensemble Metrics

Free Energy: -77.09

Frequency: 0.0000

Diversity: 122.39

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((...((((((.(.......((((..................))))........).))))))...))))(..(((((((..(..(((((.(((..((..(((.....))).))..))))))))..)))))(((((.((((((..((((((.....(((...(((......))).....((((((....))))))(((....))).(((((((.........))))))).((((((((....))))))))..((((((..(((((..(((..(...............)..))))))))))))))..........))).....))))))..)))).))....)))))..)))....)

Thermodynamic Ensemble Prediction

{{({.,.............{((((.....}}},,...(((((,..|(((,,(((..{(({{.{{...(((((...)))))...,,.}}}}},,)))))))))))))..,,,{,{,|||,,,.|||||.{,.||||,|{{{{{,{.{{((((,...........{{(,,....}}}.{,,,(({{{,....)))))){{{....))),{((((((.........))))))}.((((((({....})))))))..,}}}|}},,,{{|.}|||,.|,,......{{....|}..||}}||},||||}|{{.....,{(((({,,..,}}}}}.})},}})}),})))}},|,.},.},.)