Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_EP300_0021200

Sequence Length

493 nt

GC Content

0.4260

UUACACAACAGGGCAUAUUUGGGCAUGUCCACCAAGUGAGGGAGAUGAUUAUAUCUUCCAUUGCCAUCCUCCUGACCAGAAGAUACCCAAGCCCAAGCGACUGCAGGAAUGGUACAAAAAAAUGCUUGACAAGGCUGUAUCAGAGCGUAUUGUCCAUGACUACAAGGAUAUUUUUAAACAAGCUACUGAAGAUAGAUUAACAAGUGCAAAGGAAUUGCCUUAUUUCGAGGGUGAUUUCUGGCCCAAUGUUCUGGAAGAAAGCAUUAAGGAACUGGAACAGGAGGAAGAAGAGAGAAAACGAGAGGAAAACACCAGCAAUGAAAGCACAGAUGUGACCAAGGGAGACAGCAAAAAUGCUAAAAAGAAGAAUAAUAAGAAAACCAGCAAAAAUAAGAGCAGCCUGAGUAGGGGCAACAAGAAGAAACCCGGGAUGCCCAAUGUAUCUAACGACCUCUCACAGAAACUAUAUGCCACCAUGGAGAAGCAUAAAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-104.90 kcal/mol

Ensemble Metrics

Free Energy: -113.17

Frequency: 0.0000

Diversity: 104.64

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((.....((((((.(((((((((.(((..(....)..))).)))(((((.(((((((((((..((((((((.((((.......(((..((...((....)).))..)))...........(((((......((((.(((((((....(((((.((....)).)))))...........))).))))..)))).....)))))((..((((((((((((......)))))))))))).))((((((((((...)))..)))))..))..))))..))))))))..................((......)).))))))....(((....)))............((((....)))).....))))))))))..........((..........)).((((......))))............))))))))))))..)))).((.......((((.((.................)))))).........))

Thermodynamic Ensemble Prediction

{({{{.....((((((.(((((((((.(((..(....).,|||,||},{{{{,|||||{((((({.((((((((.((((..,.{{{(({..((...((....)).))..}))},.........(((((......((((.(((((((....(((((.((....)).)))))...........))).))))..)))).....)))))((..((((((((((((......)))))))))))).))((({{((({(...,,,.,}))))..))..))))..)))))))).,................((......)).))))))...,(({....))}.{,...}}...,((({....)))).....}}}}},}}}}..........((..........)).((((......))))............)))))}))))))..}))},{|.....,,{{||.,|,...,,.{{{|{.....}},,),.)},,,.,,})