Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_EPHB4_0002800

Sequence Length

333 nt

GC Content

0.6607

CCCCUCCUUCGGCUCCGCGGAGCGUGGUUUCCCGCCUGAACGGCUCCUCCCUGCACCUGGAAUGGAGUGCCCCCCUGGAGUCUGGUGGCCGAGAGGACCUCACCUACGCCCUCCGCUGCCGGGAGUGCCGACCCGGAGGCUCCUGUGCGCCCUGCGGGGGAGACCUGACUUUUGACCCCGGCCCCCGGGACCUGGUGGAGCCCUGGGUGGUGGUUCGAGGGCUACGUCCUGACUUCACCUAUACCUUUGAGGUCACUGCAUUGAACGGGGUAUCCUCCUUAGCCACGGGGCCCGUCCCAUUUGAGCCUGUCAAUGUCACCACUGACCGAGAGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-127.20 kcal/mol

Ensemble Metrics

Free Energy: -132.53

Frequency: 0.0002

Diversity: 86.87

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.......((((((((.((((.((((....))))))....((((((.....((((((.....)).))))......))))))..((((((....((((((((((((.(..(((((((.(((((........)))))((((((((.(((.....))).))))).)))..........(((((...)))))....)))))))..)))))))).)))))...))))))((..((((((((..........))))))))..)).......((((....))))....)).))))).)))........).)(((.((...((((....)))).)).)))

Thermodynamic Ensemble Prediction

(,,......((((((((.(({({({((...,))))},....(((({(.....{{{{{{,,...||,}}}},,,...}}}}|}.,((((((....((((((((((((.(..(((((((,(((((........)))))((((((((.(((,...,))).))))).)))..........(((((...)))))....)))))))..}))))))).)))))...)))))){{..{(((((({..........}))))))}..,}.......||||,,.,))))....)),)))))}},}........}.)(((.((...((((....)))).)).)))