Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ERBB2IP_0004700

Sequence Length

435 nt

GC Content

0.3839

GGCUCCCUAAGUCAUGCAUAAUGAAUUCAUGGAGGAAAAGAAGUUGUUACAAGUUACUAGGAGAAACAAAGAAUGUUGGCUCAAUUAAGAAACAUCAGGGAGAUAAAUUCAACCCAGUGUGUCUAAAAAUGACUACAAAACGAAGUUUGUUUGUGCGGUUGGUACCAUGUCGCUGUCUACGAGGGGAAGAGGAGACUGUCACUACUCUUGAUUAUUCUCAUUGCAGCUUAGAACAAGUUCCGAAAGAGAUUUUUACUUUUGAAAAAACCUUGGAGGAACUCUAUUUAGAUGCUAAUCAGAUUGAAGAGCUUCCAAAGCAACUUUUUAACUGUCAGUCUUUACACAAACUGAGUUUGCCAGACAAUGAUUUAACAACGUUACCAGCAUCCAUUGCAAACCUUAUUAAUCUCAGGGAACUGGAUGUCAGCAAGAAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-78.30 kcal/mol

Ensemble Metrics

Free Energy: -89.50

Frequency: 0.0000

Diversity: 175.04

Structure Visualization

Structure Prediction

MFE Structure Prediction

(..((((((.((.((...((((((.(((...........))).))))))...)).)))))).))..)......(((((((...........((((..((..((.....))..))..))))(((.......)))...........((((((..(((..(((((((....((((.(((((....((.((((((((....((((.......))))..)))))...(((..(((((...((((((....(((.(((((.(....).))))).)))...))))))...))))).)))....(((.(((((((((((...))))...))))))))))(((((..........))))).))).))))))).))))..........)))))))...))).)))))).......(((.(((....)))))))))))))......

Thermodynamic Ensemble Prediction

{.{(((,{,,,((((.....||}}.||,..}}}}...,,|||{((({||...||,,||,||{||{,{{.....{{{({{|{{.....{{{.{(({..(({.((.....))..)),.)))},||}.....,))},,}..,,|{,.,{||||}}{|{.,(({{|{|,,.,{{,({(((,...(((({,{,,(((((..........)))))..,..}))))...|}|}},{{{{...{(((((..,,({(.(((((.{....),)))},.)))...)))))),..|||,{{|||,.,||||,|||||||||||,..,})},,}))))),,,}}{{|||||.....,|,||}},}}}}},.})}},.}}},....,...},},}}}||,,|||,,}},,}|,,.....{{{.{{|,...)))))))),}))}....,,