Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ERBB2IP_0007500

Sequence Length

340 nt

GC Content

0.3824

AAUGUUGGCUCAAUUAAGAAACAUCAGGGAGAUAAAUUCAACCCAGUGUGUCUAAAAAUGACUACAAAACGAAGUUUGUUUGUGCGGUUGGUACCAUGUCGCUGUCUACGAGGGGAAGAGGAGACUGUCACUACUCUUGAUUAUUCUCAUUGCAGCUUAGAACAAGUUCCGAAAGAGAUUUUUACUUUUGAAAAAACCUUGGAGGAACUCUAUUUAGAUGCUAAUCAGAUUGAAGAGCUUCCAAAGGACUUAAGUACAACGUUGAAAAGAAGUGGCAGGAAUAGGCAUCCUUGCCUUAUCCCAGAUCUUAAAGGAAAAGCUUUCAACUUUUCAUUGUUAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-66.00 kcal/mol

Ensemble Metrics

Free Energy: -74.73

Frequency: 0.0000

Diversity: 122.55

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((......(((((......(((.((.((....(((((((((((.(((.......)))))).((((((...)))))).)).))))))....)).)).)))((((.(..(.((.(((((....((((.......))))..))))).)).)..).))))........((((((.........))))))......(((((((((..((((((((.(((....)))))))...))))))))).)))).)))))...)))))))...((((..(((...((..(((((....)))))..)))))..))))....((((((.......))))))........

Thermodynamic Ensemble Prediction

{{{(((({{({..{{{(({.{{{{,.(({.{(.....}|..|||.}||}(((.......)))||||{(((({...})))))|}|.|||,,,.}}}.,,||{((|{,,..(({({,,,,(({{{....,,.,,.))))),.,..,||||.|{|}|||{{.....}}}}}.|||{,|||,,,,{|.},},}),,,,..(((((((((..(((,((((.(((....))))))).},}),,)))))}}})).,,,,,,,.}}}}}}},,.{{||,,|||}.{((..(((((....)))))..)))},..)))},,..||,,{|,,.....))))})...,,,..