Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ERBB2IP_0024000

Sequence Length

330 nt

GC Content

0.4697

AAGCAUCCCCAGACAUCCAGUUCAGGAGAUCCUUGUCAAGAUGGUAUAUUCAUUUCAGGACAGCAGAACUACUCAUCAGCCACACUUAGUCACAAAGAUGUUCCUCCAGACAGCUUGAUGAAAAUGCCUUUGAGUAAUGGACAGAUGGGCCAGCCUCUCAGGCCUCAGGCAAAUUAUAGUCAAAUACAUCACCCCCCUCAGGCAUCUGUGGCAAGGCAUCCCUCUAGAGAACAACUAAUUGAUUACUUGAUGCUGAAAGUGGCCCACCAGCCUCCAUAUACACAGCCCCAUUGUUCUCCUAGACAAGGCCAUGAACUGGCAAAACAAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-70.40 kcal/mol

Ensemble Metrics

Free Energy: -76.57

Frequency: 0.0000

Diversity: 85.97

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((.........((((((((((....(((((((.((((((.....)))))).((((.((((.....(((..(((((..((..((((((...((.(((((.((.(((..(..........(((((((((((((...(((.(((..(((.((((...))))....)))..)))...)))...))).)))....((.(((....))).)).))))))))..))).))))))).))...))))))..))..))))).)))(((......)))...................)))).)))).))))))))).))))))))........)).

Thermodynamic Ensemble Prediction

.....|(.........((((((((((....(((((((.{(((((.....)))))}.((((.(((({....{{{..(((((..((..((((((...((.((((,,({.(({..{{{{{.,,...((((({.{((({,..{({,.((({{(((.{,{,...,)))}...|||..,,,...)))...,,),))..,..,}}|})))}},},.}}}}})}}.....))).))))))).))...))))))..))..))))).,}}({{......))}.,................,)))).)))).))))))))).))))))))........)},