Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ERBB2IP_0024500

Sequence Length

364 nt

GC Content

0.4231

AUGCCUUUGAGUAAUGGACAGAUGGGCCAGCCUCUCAGGCCUCAGGCAAAUUAUAGUCAAAUACAUCACCCCCCUCAGGCAUCUGUGGCAAGGCAUCCCUCUAGAGAACAACUAAUUGAUUACUUGAUGCUGAAAGUGGCCCACCAGCCUCCAUAUACACAGCCCCAUUGUUCUCCUAGACAAGGCCAUGAACUGGCAAAACAAGAGAGUAAGUUUUUUGGCAUUUAUUUUCUGGCCAUGAUGGAUUUACCCUAACUCCUGAAAUGAAUAAAAACAGACAAAAUAUUUGAAACAAUGAUUUUCAAAAUACUGGACAUCAAGAAAUGAAGGACCGUGGUCCCUGAAGGAUGGAGAAAAAAAAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-70.40 kcal/mol

Ensemble Metrics

Free Energy: -78.03

Frequency: 0.0000

Diversity: 112.48

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((..(((....((...((((((((.........))))...(((........))).....)))).))...)))))))))((.(.......(((((.((.((.((.((.....((.(((.(((((((((...((((((......)))(((((...((..(((...(((((......))))).((((.....))))......(((((((((((........))))))))))))))..))))))).............(((.............)))........(((((((.......)))))))..))))).))))))).))).))......)).)).)))).)))))..........).))

Thermodynamic Ensemble Prediction

((((((.{(((,,..{(,,.((({,(((.{{{,...,)))}...|||..,,,...)))...,,),)),.,...|}|})))))((,{,,...,,|||({.((((((((((((....,{,..,...(({.((((...({({,.,,,,,)),,},,......))},..,.))))))),,))))...,((((.....}}}}....,.(((((((((((........)))))))))))|||||||..((,.....,,....|||{,.............||,........{{{{{{,....,,,}||||},....}}},,}|||.....},,.||,|,}}})))|,....))))),.........}.))