Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ESR1_0000500

Sequence Length

410 nt

GC Content

0.4488

GUCAGAGGAUUCACAGGGUAACAGGAACUGGACCUGAACCUGAGCUUCAUGCAGUCCGCAGAUUUUUUAAGUGGUUUGUUUUUUAGAAGUGUUUGUCACGACCUCUAAAUCAUUGUUAAUUUCAUCGUUAAACUGGCCUCAGAGAGAUUUUGUUUUAAAGAGACAAUGCAGUUAGAGGAUCGUGAUCUCUGAACUCAGAAGCCCAGAACUCCAAAGCUGGAAGCCACCAGAUCCUAGCAAGUGAAGCUCUGUCAAUCUGGAGCCGCAGAUUUUGACCACGUGUGCACAGCCUCCCAUCUGGGCAAGCCCUUUUCUCUCCACCACUCCACUCCACAGCUUCUGUUUCUUUUCUUUUCUUUUUUUUUCGCUGAAUUCAUCAUCCCUCCCUUUCCCAUGCCGAGACUUAAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-86.50 kcal/mol

Ensemble Metrics

Free Energy: -95.09

Frequency: 0.0000

Diversity: 111.06

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.(.(((((..((((....((((.......))))..)))).((.....))))))).).)))((((((((((((.((......(((((.((((((((((((((((((.((((((((..(((((..(((...(((....)))...)))..))....)))..))))))).).))))))).))))))).((((....)))).(((((((........((((...(((((........(((.......)))..(((((((((......)))))..))))...))).)).))))......))))))))))).)))))....................((((.............................))))......................)).)))...)))))))))

Thermodynamic Ensemble Prediction

({(,{.(((,,..{((({...((((....,..}}}|..}}}}.{{.,,.,}}}}}}},|,||,,{,,,,(((((..((......(((((.((({((((((((((((((.{(((((((..((({,,,,{{...({{....|}}.},)}}..,)....}}}..))))))).}.))))))).))))))).((((....)))).(((((((........((((,..{{{{{,,{.,...,{{..{{{..|||,,(((({((((......))))}..}))}...))),}),)}))......)))))))}))).}}))),,......})..))}}}...,||..}))))....................,,,|,||,...........,,.....,,.,..)}|}}}},,,}})))