Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_FARP1_0001200

Sequence Length

250 nt

GC Content

0.4000

AGAAAGACUGGAGGAGCUUUGUUGGCUGCCUGCGUUUUGAAGGAGUGGAUUGGAAAGAGCAAUUUGUGUGUAAAAUCUCGAGGCCCAGAAUGGAACAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCUUGGAACGUGGACAGAAGCCGCCCCCAACACCUUCAGGAAAACUCGUGUCCAUCAAAAUCCAGAUGCUGGAUGACACCCAGGAGGCAUUUGAAGUUCCA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-42.70 kcal/mol

Ensemble Metrics

Free Energy: -47.83

Frequency: 0.0002

Diversity: 41.97

Structure Visualization

Structure Prediction

MFE Structure Prediction

............(((((((((...(((.((((..(((((((((.((((((((.......))))))................(..(((...)))..)........................................................(((...((((.(....)))))..))))).)))))))))......(((((.......((((((...))))))))))).)))).)))...))))))))).

Thermodynamic Ensemble Prediction

,,.....,,...(((((((({...(((.((((.{(((((((((.{{((((({......{||,},}}}......,,}}}|,.{..(({...}))..}..,....................................................,(((...((((.{....}))))..)))}}.))))))))}......(((((.......((((((...))))))))))),)))).)))...))))))))).