Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_FGD4_0002300

Sequence Length

445 nt

GC Content

0.4697

GCAGCAGUACCUGUCCAAAGAUCGCUUUAGUUCCACCUUGCUCCACAAGCAGCACAACCACACUGGUUGGUGAGAAUGUAUCUGAAGAAGAGGCUCAGGGAAUAAAUGGGAACAGGCCAGCAAAACACUCAGCUGCAAGUCCAAAGCCACAAGAUCUAGGCCAGUGAGCAUGAGCCAACUGUCAGCUAACUGAGUUUAUAAAAGAGAUGAGAUCACUAAAAACCAGGGGAACCAGCUGGGGGAAAAUGAGGCAUGUAAUUAGGAGGCGACAUGACUCCUCACCCUUCUUCCAGAAGUGCCUCCAAAGCCAUUACACCUGCAGAAUUCACCUUCGUCCAAUAUACACCAAACCCCCAGGCAUAAAGCUUUACCUAGUGCAAAACCAAGGAUGGAGGAAAUUAAACCUGCCUCUGCUUCUUGUGUCUCAAAAGAAAAACCCAGUAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-99.60 kcal/mol

Ensemble Metrics

Free Energy: -107.89

Frequency: 0.0000

Diversity: 106.02

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((......))))(.((((....)))).(((((.(((((((.....))))...((((((...))))))((((.....(((((.......((((((((..........(((.(..((.(((..........)))))..))))...(((..........)))((((..((....))..))))........)))))))).......)))))...))))........))))))))..((((((((.....(((((((......((((((.(...(((....)))))))))).......))))))).....)).........(((((...(((((((((((.........((.......((((.....)))).......)).........)))))))))..........))..)))))(((((.........)))))...))))))..)

Thermodynamic Ensemble Prediction

((((......)))}{.{{{(....}}}}.(((((.(((((((.....,),)}},((((({...})))))((((.....(((((.......((((((((........,,((,,{..({{(((..........)))))..})))...(((..........)))((((..((....))..)))).....}..)))))))).......)))))...))))........))))))))..(((((({{.....(((((((,,....,((((({(...{{,....}}}.,|||||...,}}})))))))}....},..,.,....{{{{{,,,..(((((((((.........{{.......{(((.....)))}......,)).........)))))))))..,,.....,))},}}}}}{{{{{,|},,,},.,}}}....))))))..)