Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_FGD4_0010300

Sequence Length

410 nt

GC Content

0.3951

AAUCACUUGAAAUUAUAUCUACAGCAGCAAGCCAUUCUAAUAGUGCAAUAAGGAAAAUGGAGAACCUAAAGAAACUCUUAGAGAUUUAUGAAAUGUUGGGAGAAGAAGAAGACAUUGUAAACCCUUCAAAUGAACUAAUAAAAGAAGGACAGAUCCUCAAACUAGCUGCUCGGAACACUUCAGCACAAGAACGCUACCUUUUCUUAUUCAACAACAUGUUGCUGUACUGUGUGCCCAAAUUCAGCUUGGUAGGCUCUAAAUUCACAGUUCGAACCAGGGUUGGCAUUGAUGGAAUGAAAAUUGUAGAGACUCAAAAUGAAGAAUAUCCACAUACUUUCCAGGUGUCUGGGAAAGAGAGAACACUGGAACUGCAGGCCAGUUCUGCGCAAGACAAAGAAGAAUGGAUCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-71.50 kcal/mol

Ensemble Metrics

Free Energy: -81.89

Frequency: 0.0000

Diversity: 111.64

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((((.........(((((((((.......(((((.(((......(((...........)))......))).)))))..........((((((...(((.(((((((..........(((((................)))))..............((((((((.(((....))))))).......))))..))))))).)))..))))))))))))))).((((((......((((..((((....(((((..((((((((.(.(((....))).).)))).))))..........)))))..))))..)))).......))))))..((((((((.(((.......)))..)).)))))).((((((.....))))))...................)))))

Thermodynamic Ensemble Prediction

.....(((((..,,.,.,,(((((((((,..,,,(((({{.({{......{{{.....,,....}}}......}}).))))),.........,(((((,{{{((((((({(...,,,,....{{(((................)}}||,....,,,,,....{{((((((.(({....))))))).......)))}..))))))).))),,))})})))))))))}.((((((......((((..((({..{.(((((,,(({{{{{{{(,(,({{..,,),).,))).},}},),....,,.))))).}))))..)))).......)))))).,((((((,{.{||.,,,.....},,,}.)}|}}}.{({{{,.,,.,}))}},............,,,}},.)))))