Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_FOXJ3_0006700

Sequence Length

400 nt

GC Content

0.4150

GAUGACAUCUGAACUGGAGAGCAGCCUAACGUCUAUGGACUGGUUACCACAGCUCACCAUGAGAGCAGCCAUCCAAAAAUCUGAUGCUACACAAAAUGCACAUGGAACAGGAAUUUCUAAGAAGAAUGCACUCCUUGACCCAAAUACAACUCUGGACCAGGAAGAAGUCCAACAGCACAAAGAUGGGAAACCUCCAUACAGUUAUGCCAGCCUCAUUACAUUUGCAAUUAAUAGCUCACCCAAAAAGAAAAUGACUUUAAGUGAAAUUUAUCAGUGGAUUUGUGAUAACUUCCCAUAUUAUAGAGAGGCUGGCAGUGGUUGGAAGAAUUCCAUACGACAUAAUCUGUCAUUGAACAAAUGUUUCCUUAAAGUGCCUCGAUCUAAGGAUGACCCUGGAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-80.20 kcal/mol

Ensemble Metrics

Free Energy: -89.63

Frequency: 0.0000

Diversity: 125.78

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.(((((....((((((....(((....((((((((.(((((......((((.......)))))))))))))......((.(((..........)))))))))..)))..))))))...)).))))).))(((...(((..........))).(((((.....((((....((((......(((((((.......((((..((((((((((.........((........))((((....((((.......))))..))))..............(((((((((........)))))))))))))))))))..(..(((((...)))))..)((((.....)))))))).......)))))))....))))..........))))...))))).)))

Thermodynamic Ensemble Prediction

({{(.({(((....((((({{{,.{{{...,{{{.{({{,((({{......((((.......))))})}))))}}......{{.(((..........)))}}|||..{((({..((((....)))).....))}||}..|||..........|||{{.,,,.....})))}...|{{{...,{|((({,.{.||||..{{.,..((((((((((.........((........}}{({{....{{{{.......}}}}..))})..,}},,...}}},{{{(({{{{........)}}}}))),)))))))))),}},.||||....))))),.,((((.....))))...,,,{....)))}|||,...}}}}.,,..,,|,,})),,.,)||},..})