Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_GCN1L1_0013500

Sequence Length

250 nt

GC Content

0.4960

CAGCCCCGGCAGGAUGGCGGCGGACACGCAGGUUUCCGAGACACUAAAGCGUUUUGCAGGGAAGGUGACAACAGCCAGUGUAAAGGAACGGAGAGAAAUCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCGGGCGGGUGGACGAGAAUGGCCCGGAGUUGCUGCCUCGCGUGGCCAUGCUGCGUCUUCUGACUUGGGUGAUCGGGACGGGCUCGCCUCGCUUACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-62.40 kcal/mol

Ensemble Metrics

Free Energy: -66.93

Frequency: 0.0006

Diversity: 63.02

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.....((((.(((((.(((((...((((..((((...(((((...(((((((((.......)))).))).)).)))))...))))..((......))..................................................((((((((.(...........).)))))).))..)))).)).))).))))).)))).....))).(((((((((.((((.....))))..))))))).))

Thermodynamic Ensemble Prediction

(((,,,..((((.(((((.(((({...(((({{{(((...(((((...(({{,{(((,......|)),,)),.)).)))))...))))}.,,......}}..................................................{(((((((.{.,........,}.)))))).|,..)))).)).))).))))).)))),,,,.))).||||||{{{.|||{.,},,))})|.}})}}},.,)