Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_GIGYF2_0022100

Sequence Length

558 nt

GC Content

0.5376

CUAGAGCAAGAGAGAAGAGAGGCAGAAAUGAGGGCAAAACGGGAAGAGGAAGAGCGAAAGAGGCAGGAAGAACUCCGAAGACAACAGGAGGAAAUUCUUCGGCGACAGCAGGAAGAAGAAAGGAAAAGGCGAGAGGAAGAAGAACUUGCCCGAAGGAAACAGGAAGAGGCUCUGCGUCGCCAGCGGGAGCAAGAAAUUGCAUUAAGGCGACAGCGAGAAGAGGAAGAAAGACAGCAGCAAGAAGAAGCUCUUAGAAGACUGGAAGAGAGGAGAAGAGAAGAGGAAGAAAGGCGGAAGCAGGAAGAAUUGUUACGCAAACAGGAAGAGGAGGCUGCAAAAUGGGCCCGGGAAGAAGAAGAAGCCCAGCGUCGAUUAGAGGAGAACCGGCUGCGGAUGGAAGAGGAGGCAGCCAGACUCCGGCAUGAGGAAGAAGAACGGAAGAGAAAGGAGCUGGAGGUCCAGCGGCAGAAGGAGUUAAUGCGCCAGAGGCAGCAGCAGCAAGAGGCUCUCCGGAGGUUGCAGCAGCAGCAGCAGCAACAACAGCUGGCGCAGAUGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-126.60 kcal/mol

Ensemble Metrics

Free Energy: -135.65

Frequency: 0.0000

Diversity: 104.05

Structure Visualization

Structure Prediction

MFE Structure Prediction

((..................))(....((..(.((..................((.......))........((((..........))))....((((((.((....))..))))))..........((((((...........))))))...........(((.(((.((((((((((((....((.((((....)))).))..)))))).))...................(((((.........(((((......((.....)).....))))).............(((..(((((......))))).)))...............)))))..(((.((((.(((............))).).))).)))...((....))((((((..............))))))....((((................)))).......(..(((((....)))))..).......(((..((((((...))).)))..))).)))).))))))....(((((....)))))..((((.......)))))).)..))...)

Thermodynamic Ensemble Prediction

(({{.,{..............|{........,,{{....,.............((.......))........((((..........))))....{(((((.((....))..)))))}..........((((((...........)))))),........,.((,,(((.((((((((((((....{(.((((....)))).))..)))))).))...................(((((.........(((((......{{.....,,,,.....................(((..(((((......))))).)))...............)))))....({(((,,,,,...........}))),,{,||..,,.,,{|....|}((((((...,..........)))))).,.{((({...,............},,,.......,..(((((....)))))..}....,,.{{{..((((((...))).))).,})).}))).)))))).,..(((((.((....}}.))}))..}....,))))|.,.......)