Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HECTD1_0015400

Sequence Length

229 nt

GC Content

0.4236

GCUGGAGGACCCCUCAUUCAGAGCUCUUGGAAGAAGUCGAAUGUACUCCGUCACCUCGAUUAGCUCUCACUUUGAAAGUAACAGGUCUUGGAACGACUCGUGAAGUUGAAUUACCACUCACCAAUUUCAGAUCAACCAUCUUUUACUAUGUACAAAAAUUGCUUCAAUUGUCCUGUAAUGGCAAUGUGAAAUCAGAUAAACUUAGGCGUAUUUGGGAGCCCACAUACAC

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-36.10 kcal/mol

Ensemble Metrics

Free Energy: -41.94

Frequency: 0.0001

Diversity: 60.26

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((((((...))))....((((((.........((((((.((........))..)))))))))))).........(((((.(((...(((...((.((.((((((((.............))))))))))))..)))))).)))))...............((((((((.((......)))))).))))............)))(.((((.(((....))).)))).)

Thermodynamic Ensemble Prediction

(((,((((...)))).,,,(((({{..{,{,.{.{({(({.,{.....,}.}}..))})}}}})))},,,,||}},(((((.(((,..{((...((.((.((((((((.............))))))))))))..)))})).)))))..,,........||.{(((((((.({......)))))).)))}............,.))}(({{.(((....))).)}},,)