Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HECTD1_0017200

Sequence Length

180 nt

GC Content

0.4778

GGAGCCGACCUAUUGGGGAGCAGGAAGAAGAAGAGUACGAAACUAAAGGAGGACGCCGGAGAACAUGGGAUGAUGAUUAUGUGCUAAAGAGACAGUUUUCUGCAUUGGUUCCUGCUUUUGAUCCUAGACCUGGUCGUACUAAUGUCCAGCAGACAACUGAUCUAGAAAUACCACCCCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-35.00 kcal/mol

Ensemble Metrics

Free Energy: -38.85

Frequency: 0.0019

Diversity: 40.21

Structure Visualization

Structure Prediction

MFE Structure Prediction

((......))(..(((((((((((((.....((.(((.((((((...((......))..((.((((((........)))))).))........)))))).))).))..)))))))).......(((((.((((.(((....))).))))(((....))).))))).........))))))

Thermodynamic Ensemble Prediction

((......))(..(((((.{,{(({.,,..{((((((.({{(((({.(((((((,{{..((.((((((........)))))).))...,.}.,.)))))))...))))))),)))))}}..}}(((({.((((.(((....))).))))(((....))).)))))........,))))))