Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HECTD1_0019000

Sequence Length

447 nt

GC Content

0.4586

GUCCUUCCUCUGAUGAUGAGAAUGAAGAGGAAUCAAAACCAGAAAAAGAAGAUGAACCACAGGAAGAUGCUAAAGAAUUGCAACAAGGAUCCACAUAUAACCUCCAGAUACUUACAAGGAGAUUACGAUUUCGGUUGGAACGUGCACCUGGUGAAACUGCAUUGAUUGACAGGACUGGCAGAAUGUUGAAGAUGGAACCUUUGGCUACAGUUGAAUCUCUGGAACAGUACCUUUUGAAAAUGCUGCCGUGCCAGUACUCUAUUGGCUGAGCUCGAUGAUGAUGAGGACUUACCUGAGCCAGAUGAAGAAGAUGAUGAGAAUGAAGAUGACAAUCAGGAGGACCAAGAAUACGAGGAGGUUAUGAUUCUGAGACGCCCAUCCCUGCAACGUCGAGCUGGCUCCCGCUCUGAUGUAACGCAUCAUGCUGUUACCUCGCAGCUACCACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-93.70 kcal/mol

Ensemble Metrics

Free Energy: -102.20

Frequency: 0.0000

Diversity: 106.27

Structure Visualization

Structure Prediction

MFE Structure Prediction

((..(((((((..............))))))).....))(..........((((.....((((..((((..........((..(.((((((.....(((((((((......((((.(((....((((.((((....))))))))..))).))))..(((((.....)).)))(((((((.(((.(((........))).))).))..)))))...(((((((..(((((((((......((...((((.(((((((...))))))))).))...))......))))...)).)))..))))).))......((((....((....))....))))((....))..........)))))))))))))))..)..)).))))))))...))))((((.((...))))))((((((...)))))).(((((......))))).......)

Thermodynamic Ensemble Prediction

((..(((((((..,.,,....}}..))))))).....,,{..........{{{{.....((({..({(({.........||,.,.((((((.....(((((((((......((((.(((.,..((((.((((....)))))))),.))).))))..(((((.....)).))){((((((,({{.(((.,,,....}}}.})},))..}}}}}...{{{{||{..{{||{||{{,|.|..{{.,.(({{.(((((((...)))))))}}.)).,.}}..,.,.}))}...}}||)),.))))}.,,......,,,,....,,....|}....})))||.,..))..........)))))))))))))))..|..|,.},}}}}))...))))((((.({...)})))){(((((...)))))}.(((((......)))))..,,...)