Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HECTD1_0028000

Sequence Length

381 nt

GC Content

0.3806

UCGACCAGCAGUUGCGUUAAUUCGAAAGUUAAUAGCUGUACUAGAAUCUAUUGAACGUCUACCUCUCCAUUUGUAUGAUACACCAGGAUCCACAUAUAACCUCCAGAUACUUACAAGGAGAUUACGAUUUCGGUUGGAACGUGCACCUGGUGAAACUGCAUUGAUUGACAGGACUGGCAGAAUGUUGAAGAUGGAACCUUUGGCUACAGUUGAAUCUCUGGAACAGUACCUUUUGAAAAUGGUAGCAAAACAGUGGUAUGAUUUUGACCGAUCUUCAUUUGUUUUUGUUCGAAAAUUAAGAGAAGGACAAAAUUUUAUAUUUCGGCACCAGCAUGAUUUUGAUGAAAAUGGAAUCAUUUACUGGAUUGGAACAAAUGCAAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-73.20 kcal/mol

Ensemble Metrics

Free Energy: -83.18

Frequency: 0.0000

Diversity: 112.40

Structure Visualization

Structure Prediction

MFE Structure Prediction

...........(((((((..(((.((......(((((((((((((.((((((.(((((((.((..(((((....)))...(((((((...(((...(((((((..(((.(((.....))))))..))....)))))....)))..)))))))...(((((.....)).)))))..)).)).)))))...))))))...))))).)))))))).(((.(((......((((..........))))......))).))).......((.((((...........((((((((..............)))))))).........))))))((((.((((((((.((....))))))))))...)))).)).)))..))))))).

Thermodynamic Ensemble Prediction

(({,,,,,...(((({((..(((,{{{|.,,.{((((((((((((.((((((.(((((((.((..(((,,,({{{.{...(((((((.,.(((...((((((({............)))},,,..|,,,,|)))))....))).,)))))))...||}}}......,.,,)))..)).)),,))))...})))))...))))).)))))))}.,,{.{|{,..,,,{{{|,,},,,,.,.})}},},...}}},))).,||{{{{{.,|||{.,.{{((((((((({,,({{||..{{{||...}}.,,,,,))}}}..}})))}},((((.((((((((.{(....))})))))))...))))..,,)))}}))))})}}