Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HECTD1_0029700

Sequence Length

250 nt

GC Content

0.2680

AUCCCAAAGUUCAUCUGGAAGAAUAAAUAGGUGAGAUUAUUAAAGAAAAAUCUGAAAUGUUAGUGUAACCCUUUAGCAAUGAAAUUUUUAUGAUAACUAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAGUUGCGUUAAUUCGAAAGUUAAUAGCUGUACUAGAAUCUAUUGAACGUCUACCUCUCCAUUUGUAUGAUACACCAGGAUCCACAUAUAACCUCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-21.90 kcal/mol

Ensemble Metrics

Free Energy: -27.13

Frequency: 0.0002

Diversity: 53.05

Structure Visualization

Structure Prediction

MFE Structure Prediction

((..........))(((((..........((.(((.((((((.(((((..((.....((((((.........))))))..))..))))).)))))).......................................................((((((..(((((((....)))))))))))))..((((.((....))...)))).))).))..(((((((...............)))))))..)))))

Thermodynamic Ensemble Prediction

((..........))(((((.{.....,,,(({(((,(({(((.{{({{.,{{{....{(((({.,.......)))))).,}}..})))).))))},.......................................................((((((..{((((({....}))))))))))))..{{{{.{{....))...)))).)},,||..,{(({,{.,,},...}}},,..,.,,,...,)))))