Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HECTD1_0037900

Sequence Length

485 nt

GC Content

0.3856

GUGAUUGGAUGUGUCCAGUUAAUAAAGGAGAUGAUAAGAAAAAGAAAGAUACAAACAAAGAUGAAGAAGAAUGUAAUGAGCCCAAAGGAGAUCCGGAAAUGGCACCCAUAUACUUGAAAAGGUUAUUGCCAGUGUUUGCACAAACAUUUCAGCAAACUAUGCUGCCUUCAAUAAGGAAAGCAAGUCUUGCUCUAAUUCGAAAAAUGAUUCAUUUUUGCUCUGAAGCACUGUUAAAAGAAGUUUGUGAUUCUGAUGUUGGUCACAAUUUGCCUACAAUACUAGUGGAAAUCACUGCAACUGUCCUGGAUCAAGAGGAUGAUGAUGAUGGCCACUUGCUGGCUUUGCAGAUCAUAAGGGAUUUAGUAGAUAAAGGUGGUGAUAUAUUUUUGGAUCAGCUAGCCAGACUUGGUGUAAUUAGCAAAGUGUCAACGUUGGCAGGUCCUUCCUCUGAUGAUGAGAAUGAAGAGGAAUCAAAACCAGAAAAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-103.60 kcal/mol

Ensemble Metrics

Free Energy: -113.70

Frequency: 0.0000

Diversity: 148.92

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((((((....)))))))).....((...((((....................((((((((((...((((.....((((......(((((.......(((((...(((..(((...)))..))))))))..((((((............))))))..((((.((((....))))..)))).)))))))))..)))).........)))))))))).(((..(((...)))...)))...((((((((........)))))))).....((((.......))))..((((((((...(((((((((((......(((((......(((((.....)))))......)))))....)))))))..))))...))))))))........(((((.((((((..(((....(((.....)))....)))...)))))).))))).((((((..............))))))))))...)).......

Thermodynamic Ensemble Prediction

.((((((((....)))))))).....{{...{({,.........,,...{{{{,,({{{{(((({...{,,{,,...{{{({,...((....}},,...{((((...{{{.,(({....))|}}))))))|{{((({,{..,}}}}},..{{{{|{{{.((((.((((....})))..))))})).))))),..,}}}......,,.}))))))))|{{....}}},{{......,}..}}|||||{|||,..,,,,||}}}}},,||{{{,{{...,,,{||||..(((({{{(,..{(((((,,,,,...}}}|||,|,.}}}},{|||},...|}}}|.,{{,{|||,}....)))))|)||)}},...}))})))}...}}}}.{||||.((((((,,|{{.{,,{{|.....))),.},)))...)))))).))))){((((((..,.,,....}}..)))))))}},...}}.......