Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HECTD1_0039400

Sequence Length

309 nt

GC Content

0.3722

GUGAUUGGAUGUGUCCAGUUAAUAAAGGAGAUGAUAAGAAAAAGAAAGAUACAAACAAAGAUGAAGAAGAAUGUAAUGAGCCCAAAGGAGAUCCGGAAAUGGCACCCAUAUACUUGAAAAGGUUAUUGCCAGUGUUUGCACAAACAUUUCAGCAAACUAUGCUGCCUUCAAUAAGCAAGUCUUGCUCUAAUUCGAAAAAUGAUUCAUUUUUGCUCUGAAGCACUGUUAAAAGAAGUUUGUGAUUCUGAUGUUGGUCACAAUUUGCCUACAAUACUAGUGGAAAUCACUGCAACUGUCCUGGAUCAAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-48.50 kcal/mol

Ensemble Metrics

Free Energy: -56.53

Frequency: 0.0000

Diversity: 98.33

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((((....))))))))....((((((((((.......((((...((((((((((((((((...((((.....((((......(((((.......(((((...(((..(((...)))..))))))))..((((((............))))))..((((..........)))).)))))))))..)))).........)))))))))(((....))).((......))..))))))).)))).......))))...))).)))(((....(((((.....)))))....))))((........))

Thermodynamic Ensemble Prediction

,((((((((....))))))))....,,{,.,,,.........,,,,...{{{{,{{,,,,,{{,,...,..|,,...,.,((,...||.,,,||{{...{((((...{{{.,(((....))|,})}))))|((((((.,..,}}}}},.,(((({{{,.||||,.........||||}}}.}))))...,,,,.,,,,,{{.,,))))))|(({....}))}{{......,}..}}|||||,||},......|))))},,.}},}},,||....{((((,...,)))))....,,})||,,,}}...,,