Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HECW2_0009300

Sequence Length

415 nt

GC Content

0.5181

AUAUCAGAGUAUCCGCAGAACCAUGACCAAUGAGAGGCCUGAGGAAAAUACCAAUGCUAUUGAUGGGGCAGGGGAGGAAGCUGACUUUCACCAAGCCAGUGCAGAUUUCCGACGGGAGAACAUCCUGCCUCACUCUACCUCCAGAUCCAGGAUCACGUUGCUGUUACAGUCUCCCCCCGUGAAGUUCCUCAUCAGCCCAGAGUUCUUCACCGUGCUGCAUUCUAACCCUAGUGCCUACCGCAUGUUUACAAACAACACGUGUUUGAAGCACAUGAUCACCAAAGUCCGGAGGGACACCCACCACUUUGAACGCUACCAGCAUAACCGCGACCUUGUGGGAUUCCUCAACAUGUUCGCGAACAAACAGCUAGAGCUGCCGCGGGGAUGGGAAAUGAAACAUGAUCACCAGGGCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-103.30 kcal/mol

Ensemble Metrics

Free Energy: -109.49

Frequency: 0.0000

Diversity: 126.26

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((((....((((.((..(((..(((....(((.((((((..........(((..(.((((((..((((((((((((((((..(.....)..))).))).)))))(((((.((...((((((..((............))..))))))....)).)))))....))))))))))).))))))))))...)))....)))..)))..)).)))))))))........(((((.((((.(((((.((((((.....))))))))))).........((((((..((.(((...))).))))))))...(((...))).....(((((.(.((((((....))).))).).)))))......((((....))))..))))...(((((.(((...)))..)).))))))))..

Thermodynamic Ensemble Prediction

{..,.{{{({,|,.((((.{(..({{..,{{....(((.((((({,........,,,,.,|,{(((((,,((((,(((((((({{{,.|.....|..}}},)}}.|||||,,{{|}||,..{{||||,,||..,.........)}..}))))},,..}}.}}}}}.,,.}})))})})}},|||}})))))...)))....)}},,)))..}},))}}|}}||....,,.|((({{.{{{(,(((((.((((((.....)))))))))))..,,.....((((((..((.(((...))).))))))))...(((...))).....(((((.{.((((((....))),,)).).)))))......((((....))))..))))}}.||||,.,{|...}}),,)),),,)))},.}