Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HIAT1_0001400

Sequence Length

250 nt

GC Content

0.3680

AUGGCUAUAUGCAUCCAGUUCAUCCUCAUGUAGUUAGAAGACUUGCAUACCAACAUAAUCAGACCGUCUGCAGAAAUUCUCCUACAGUUGAAAUGUAACUNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUGGAUGAUGUGGGCUGCUGGGGCAGUAGCAGCCAUGUCUAGCAUCACCUUUCCUGCUGUCAGUGCACUUGUUUCACGAACUGCUGAUGCUGAUCAACAGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-47.40 kcal/mol

Ensemble Metrics

Free Energy: -50.97

Frequency: 0.0031

Diversity: 44.81

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.((....((((...((..((((((....((((..((((...(((((.((...............)).)))))...)))).))))(((((.....)))))...................................................))))))..))((((((((......)))))))).......))))..))..)((((.((((((((((...((((...))))...)).)))))).)).))))

Thermodynamic Ensemble Prediction

(.((....{{((..,((..((((((...{((((..((((...(((((.((...............)).)))))...)))).))))|((({.....})))}...................................................)))))},,|}((((((((......)))))))),,,,...)))}..,)..)((((.((((((((((.,,(({,.,,}))},)}}}.}))))).)).))))