Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HIF1A_0002500

Sequence Length

389 nt

GC Content

0.4165

GAUAAGUUCUGAACGUCGAAAAGAAAAGUCUCGAGAUGCAGCCAGAUCUCGGCGAAGUAAAGAAUCUGAAGUUUUUUAUGAGCUUGCUCAUCAGUUGCCACUUCCACAUAAUGUGAGUUCGCAUCUUGAUAAGGCCUCUGUGAUGAGGCUUACCAUCAGCUAUUUGCGUGUGAGGAAACUUCUGGAUGCUGUUUGAACUAACUGGACACAGUGUGUUUGAUUUUACUCAUCCAUGUGACCAUGAGGAAAUGAGAGAAAUGCUUACACACAGAAAUGGCCUUGUGAAAAAGGGUAAAGAACAAAACACACAGCGAAGCUUUUUUCUCAGAAUGAAGUGUACCCUAACUAGCCGAGGAAGAACUAUGAACAUAAAGUCUGCAACAUGGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-85.00 kcal/mol

Ensemble Metrics

Free Energy: -92.99

Frequency: 0.0000

Diversity: 143.68

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.(((((((......((.....))....(((((((((........))))))).)).(((((((((.....)))))))))))))))))(..((((((((.((((.((((...))))(((((...(((((((((((((((((((.((((((......((...(((((.(.((((.(...((...((((((..((((((((..((((....))))..))))))....)).)))))).))..))))).).))))).)).....)))).))))))))...)))))))).....((((((.....................(((((.(((...))).))))).)))))).......)))))..))))).........))))..))))).)))..)

Thermodynamic Ensemble Prediction

(,(((((((,,,.,.{(,....|,....||{((((((........))))))).},.{({{{((({.....))))})))})))))))}||.((((((((.{(({,({({...|||},{{{{||,|,{{{{{.(((((((......))))))}...}|||{{,{{{{||{(((({(,,.,{{{{{(({((..{{((((((..((((....))))..)))))).,..,|,}}}}}|,|...,|}},.),..,)}}}}}}},,,)}}}))),)},}..})}|||||}.....|||{|...........,.,,,.}|,,}|}|{|||||||.,...},|||.,,,}}}.,,,..,,)))),}))}}}.........,}))..))))).)))..}