Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HIF1A_0002700

Sequence Length

191 nt

GC Content

0.4398

GAUAAGUUCUGAACGUCGAAAAGAAAAGUCUCGAGAUGCAGCCAGAUCUCGGCGAAGUAAAGAAUCUGAAGUUUUUUAUGAGCUUGCUCAUCAGUUGCCACUUCCACAUAAUGUGAGUUCGCAUCUUGAUAAGGCCUCUGUGAUGAGGCUUACCAUCAGCUAUUUGCGUGUGAGGAAACUUCUGGAUGCUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-43.50 kcal/mol

Ensemble Metrics

Free Energy: -46.82

Frequency: 0.0046

Diversity: 59.11

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((((......((.....))....(((((((((........))))))).)).(((((((((.....)))))))))))))))).))..((((..(((.((((.((((.(((((((..((....((((.(((((((......)))))))...)))))).))))))))))).)))).....)))..))))

Thermodynamic Ensemble Prediction

(((((((((,,,.,.{(,....|,....||{((((((........))))))).}}.{({{{({({..,..))))}}}}}))))))}.}}.,((((..(((.((((.(({.,(((({{{..||,...(({(.(((((((......)))))))...)}}})).))))))))))).)))).....)))..))))