Sequence Details

BLAST PRIMER
Symbol
hsa_HIF1A_0004000
Sequence Length
238 nt
GC Content
0.4118
GCCUUGUGAAAAAGGGUAAAGAACAAAACACACAGCGAAGCUUUUUUCUCAGAAUGAAGUGUACCCUAACUAGCCGAGGAAGAACUAUGAACAUAAAGUCUGCAACAUGGAAGUGUUUACUAAAGGACAAGUCACCACAGGACAGUACAGGAUGCUUGCCAAAAGAGGUGGAUAUGUCUGGGUUGAAACUCAAGCAACUGUCAUAUAUAACACCAAGAAUUCUCAACCACAGUGCAUU

Secondary Structure

Generated by RNAfold
Predictions for this specific transcript isoform.
Minimum Free Energy
-35.30 kcal/mol
Ensemble Metrics
Free Energy: -40.55
Frequency: 0.0002
Diversity: 64.23
Structure Visualization
Structure Prediction
MFE Structure Prediction
(((((.......)))))((................((.((.(((((((((.(.....(((........)))..).))))))))))).))...........((((...(((.((.((((......((.(((((..((.............))..)))))))......((((.((((((...(((((.........)))))...))))))..))))..)))).))...)))...))))))
Thermodynamic Ensemble Prediction
(({((,,,....}||||{,....,....,,{...{{...|||((((((((.{.....(((........))}..}.))))))))}||.{{,,,,.....|,,,...,,|}}..))))}},.....((.(((({,,((.,......,,...)).,)))))))......((((.((((((...(((((.........)))))...))))))..))))..,....,}....,,..}}}).))
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