Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HIF1A_0004400

Sequence Length

399 nt

GC Content

0.4035

GAAAACACUAGUACUUUUCAGUUACCUUGAUUUUUAAAUUAAUCUGCAGGUCCCCAUUCAAAGGCCUUGGGUUCCUUUCAAAGGCCUUGUGAAAAAGGGUAAAGAACAAAACACACAGCGAAGCUUUUUUCUCAGAAUGAAGUGUACCCUAACUAGCCGAGGAAGAACUAUGAACAUAAAGUCUGCAACAUGGAAGGUAUUGCACUGCACAGGCCACAUUCACGUAUAUGAUACCAACAGUAACCAACCUCAGUGUGGGUAUAAGAAACCACCUAUGACCUGCUUGGUGCUGAUUUGUGAACCCAUUCCUCACCCAUCAAAUAUUGAAAUUCCUUUAGAUAGCAAGACUUUCCUCAGUCGACACAGCCUGGAUAUGAAAUUUUCUUAUUGUGAUGAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-75.40 kcal/mol

Ensemble Metrics

Free Energy: -83.65

Frequency: 0.0000

Diversity: 130.22

Structure Visualization

Structure Prediction

MFE Structure Prediction

(...((....)).)((((((.((((..(((.....(((((.((.(.(((((.(((.((((((((((((.((......)).)))))))).))))...)))...................((.((.(((((((((.(.....(((........)))..).))))))))))).))........(((.((.....(((((((.((((.(((...(((.....((((.((((.((((.....(((((.((((...(((.((((((..........))))))...))).)))))))))....((((.........))))..)))).))))))))...))).)))...)))).)))))))...)).)))...))))).).))..)))))..)))..))))))))))

Thermodynamic Ensemble Prediction

(,,.,,....,|,|{{{((({((((,.,((((.....,,,))}},(((((({(((.(((((((((((({((.....,)).}))))))).))))...)))..................,,..,|,{(({((({{.{...,.{{(,,,,,,..|||..,.||||}}}}}||.,,........||||||,...,({(((({.{(((,{{{...{({.....{{{{.{{{{.{{{{.,...{{{{,.{{{{,,}|||}{{||||,,........}}},,})}}))),}}))))))),...|||{.....,,,,|}},.,||||,|||,}|||,,,|}|,|||...}}},,|||}}}}..|}}|......},)))}|.,.||},,})),.)))}})))))}}))