Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HIF1A_0004600

Sequence Length

350 nt

GC Content

0.4200

GUCCCCAUUCAAAGGCCUUGGGUUCCUUUCAAAGGCCUUGUGAAAAAGGGUAAAGAACAAAACACACAGCGAAGCUUUUUUCUCAGAAUGAAGUGUACCCUAACUAGCCGAGGAAGAACUAUGAACAUAAAGUCUGCAACAUGGAAGGUAUUGCACUGCACAGGCCACAUUCACGUAUAUGAUACCAACAGUAACCAACCUCAGUGUGGGUAUAAGAAACCACCUAUGACCUGCUUGGUGCUGAUUUGUGAACCCAUUCCUCACCCAUCAAAUAUUGAAAUUCCUUUAGAUAGCAAGACUUUCCUCAGUCGACACAGCCUGGAUAUGAAAUUUUCUUAUUGUGAUGAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-64.10 kcal/mol

Ensemble Metrics

Free Energy: -72.61

Frequency: 0.0000

Diversity: 126.42

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.(((.((((((((((((.((......)).)))))))).))))...)))...................((.((.(((((((((.(.....(((........)))..).))))))))))).))........(((.((.....(((((((.((((.(((...(((.....((((.((((.((((.....(((((.((((...(((.((((((..........))))))...))).)))))))))....((((.........))))..)))).))))))))...))).)))...)))).)))))))...)).)))...))((........(((......)))........))

Thermodynamic Ensemble Prediction

(,,(((,{{({{{{{{{{||||..,,,|||,,}}}|}}}.}}}}..,|||,...........,,,,,,,,,.{{,{(({((({{.{...,.{{|.,,,,,,.}}}..|.||||||},,,,.........,{((({((.....{(((((,,(((({(({..,(((.....{,,,.{{,,.{{(({{,.,(({(..{{{{...,{,}||{|||,,......,.}},,})).,))).}))))))||,{..((((.........))))..)))).,,,,,}}},,.)))}),,...))}}})))))))}|.}},..|||,}.}}||{.,.||,...})).,,))})).))},,}