Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HIF1A_0005700

Sequence Length

229 nt

GC Content

0.3493

GUGGUAUCAUAGGAAAAAUGUUCAUUGAUUUUCAAAAACGUGAUUAAUCCACUAGUGACAGUAAAUUUUAUCAAAGCUUACUGGCCAUGUCAGACUCAACUACUUAUCUCUGCUUUUUUUUUCCCUAGCAUUGUAAAUAUUUUUUUUAACUGCUUUGUUCUUCAUACACAGGUAUUGCACUGCACAGGCCACAUUCACGUAUAUGAUACCAACAGUAACCAACCUCAGU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-30.60 kcal/mol

Ensemble Metrics

Free Energy: -37.31

Frequency: 0.0000

Diversity: 60.61

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((((((.....(((((...((((...))))....((.((((......)))).))(((((.((((...)))).)))))((((.((((((...(((.(((......(((..............(((((((.(((.....))).))).))))..............)))))))))..))).))))))))))))......))))))))).))(.(..........).)

Thermodynamic Ensemble Prediction

(((((((((((.{{,.{{{,{,..,{{{,,,})}...{{(({{..,......,,|||,|(((((.{{{,...}}}}.))))}((((.((((((...{{{.,,,,,.....(({{............||||.,|,{{{......,,,,,,.|}}}.{|,.......,},.))))))))..))).))))))),,,.)}}}}}.)))))))))}})(.{..........}.)