Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HIF1A_0006500

Sequence Length

234 nt

GC Content

0.3761

AAUUACCGAAUUGAUGGGAUAUGAGCCAGAAGAACUUUUAGGCCGCUCAAUUUAUGAAUAUUAUCAUGCUUUGGACUCUGAUCAUCUGACCAAAACUCAUCAUGAUAGGAACAUUAUUACAGCAGCCAGACGAUCAUGCAGCUACUACAUCACUUUCUUGGAAACGUGUAAAAGGAUGCAAAUCUAGUGAACAGAAUGGAAUGGAGCAAAAGACAAUUAUUUUAAUACCCUCUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-27.20 kcal/mol

Ensemble Metrics

Free Energy: -33.85

Frequency: 0.0000

Diversity: 91.30

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((....(((((((...((.(.((((.((....(((((..(.((((..(((((......)))))..)))).)))))))).)))).)))...))))))).....))...........(((.((..((...))..)).)))......(((((...(((.(..(........)..).)))....))))).((((..((.((......................)).)).))))

Thermodynamic Ensemble Prediction

{{({....,}}},(.(((.,,{{.({({{(,,...,}||.|||.({({,{..{(((,...,{{|||||.,|||{..{{|{{{{.|},),})),,..,,,.})}}}}}}...,,}.,,...|||.||},||.,.}}.{||,}||..{,{{({,{((({.,{}|,,.}}}},..,},.)))}..}}}}}}}}.,||,.,||,,||}}}}..,,........,}}}.,},)))},},