Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HIPK2_0001600

Sequence Length

409 nt

GC Content

0.5917

CACUGUCUCCAAGCAAAGAAAAAACGUCAUCAGCUGUGUCACAGUCCACGACUCCCCCUACUCCGACUCCUCCAGCAACACCAGCCCCUACUCCGUGCAGCAGCGUGCUGGGCACAACAAUGCCAAUGCCUUUGACACCAAGGGGAGCCUGGAGAAUCACUGCACGGGGAACCCCCGAACCAUCAUCGUGCCACCCCUGAAAACCCAGGCCAGCGAAGUAUUGGUGGAGUGUGAUAGCCUGGUGCCAGUCAACACCAGUCACCACUCGUCCUCCUACAAGUCCAAGUCCUCCAGCAACGUGACCUCCACCAGCGGUCACUCUUCAGGGAGCUCAUCUGGAGCCAUCACCUACCGGCAGCAGCGGCCGGGCCCCCACUUCCAGCAGCAGCAGCCACUCAAUCUCAGCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-104.40 kcal/mol

Ensemble Metrics

Free Energy: -112.83

Frequency: 0.0000

Diversity: 101.12

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((((........)))......(((....(((((...)))))....)))............((...((((((.......(((((((........(((((...)))))((((......))))..(.((((((....)))))).)((.(((((..........(((((...))))).((((......(((....((((......))))...)))......)))).((((((((....((((((........))))))))).))))).....................)))))))...((((((.(.....).)))))).....)))).)))...))))))...)).......(((.((.((.((.(((........))).)).)).)).))).........)))....

Thermodynamic Ensemble Prediction

({.((((({{{.((...........{{{....(((({...}}}||,...)))............|,.....|{{{{..,.,..{{..,......},}{,||,}.,}))))((((......)))}..,.{{{(((....)))))),,||,|||}}}..},,||(.(((((...))))).{(((.,.{{{({,....((((......))))...)))}.,...)))),((((((((....((((((........))))))))),,))))............,{{{,.{,.{{{{.,....((((((.{.....}.))))))......,))}),,|...})))}|..,,.,,....(((.((.((.((.(({........))).)).)).)).)))...........,...)