Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HIPK2_0002500

Sequence Length

290 nt

GC Content

0.5793

CGUCAAAUCAUGUUUCCAGAACAUGGAGAUCUGCAAGCGUCGGGUGAAUAUGUAUGACACGGUGAACCAGAGCAAAACCCCUUUCAUCACGCACGUGGCCCCCAGCACGUCCACCAACCUGACCAUGACCUUUAACAACCAGCUGACCACUGUCCACAACCAGCCCUCAGCGGCAUCCAUGGCUGCAGUGGCCCAGCGGAGCAUGCCCCUGCAGACAGGAACAGCCCAGAUUUGUGCCCGGCCUGACCCGUUCCAGCAAGCUCUCAUCGUGUGUCCCCCCGGCUUCCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-69.50 kcal/mol

Ensemble Metrics

Free Energy: -75.76

Frequency: 0.0000

Diversity: 74.83

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((...((((((((...)))))))).))).((.((((...(((.((.........(((((((((....((((.............(((.((.((.(((.....(((.(((..............................(((((...(((........)))...)))))(((.(((.((.((((((.(((...((...))..))).)))))).)))))...)))..))).)))))))))).))).............))))))))))))).)))))...)))).))..

Thermodynamic Ensemble Prediction

,(((...((((((((...)))))))).))),{|,,{({{{((((.(..........(((((((({...,((((..............,,.{.,(({({,.....,|||||,,.......,|.....,..............(((({,,,(((,.......}}|,,.}}})}|||.{{{.||,{{||||,||{.,,||,,.||..|}}.}}|}}}.))))}...)))}.,..,|}}}}.|}|},}}..,,}...,.},..))))))))))))),},},))))))}}.,..)