Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HIPK2_0003300

Sequence Length

409 nt

GC Content

0.6381

CCCUCAGCGGCAUCCAUGGCUGCAGUGGCCCAGCGGAGCAUGCCCCUGCAGACAGGAACAGCCCAGAUUUGUGCCCGGCCUGACCCGUUCCAGCAAGCUCUCAUCGUGUGUCCCCCCGGCUUCCAAGAAAUGUCUCCACCUGUGAGGUGUCCUCCUCUCAGGCCAUCAGCUCCCCACAGCGAUCCAAGCGUGUCAAGGAGAACACACCUCCCCGCUGUGCCAUGGUGCACAGUAGCCCGGCCUGCAGCACCUCGGUCACCUGUGGGUGGGGCGACGUGGCCUCCAGCACCACCCGGGAACGGCAGCGGCAGACAAUUGUCAUUCCCGACACUCCCAGCCCCACGGUCAGCGUCAUCACCAUCAGCAGUGACACGGACGAGGAGGAGGAACAGAAACACGCCCCCACCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-127.20 kcal/mol

Ensemble Metrics

Free Energy: -134.98

Frequency: 0.0000

Diversity: 149.35

Structure Visualization

Structure Prediction

MFE Structure Prediction

...((.(.(((.(((.((.((((((.(((...((...))..))).)))))).)))))...)))).))((.(((...(((.((....(((((.(((.((.......)).)))......(((...........)))..(((((...)))))((((((((((.((..(((.(((......))))))))...(((((((.((((.......))))..(((((((......))))))).((((.((((((((.((....))...)))))))).))))(((((((((....((......((((((.(((((..(....)..))))).)))))).........)).....))))).))))..............))))))))).))))))))))))).....)).)))..))).))

Thermodynamic Ensemble Prediction

,,,{{.{.(((.{((.((,((((((.(((...((,,.||..}}}.})))}}.))))}...}}}}.},.{{({{...(({.{(..|,({{{{.|,,.|{|,,...||{{{||,.....|||,....,|,...,}},.{,{{{{.{|||||(,(((((|.{||({.{{{.(((......}))}}}....}),}},...||||...,},,)))},|{({({{{,.,{|,||}}}||.((((.((((((((.((....))...)))))))).)))){{|(((({{....{{.,....((((((.(((((..{....)..))))).)))))).........}}.....)}||,|}|||.{,.,.....,..))))),)})},)}))})),))}}}.,...}}.))}..},},,}