Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HIPK2_0005200

Sequence Length

371 nt

GC Content

0.5606

CGUCAAAUCAUGUUUCCAGAACAUGGAGAUCUGCAAGCGUCGGGUGAAUAUGUAUGACACGGUGAACCAGAGCAAAACCCCUUUCAUCACGCACGUGGCCCCCAGCACGUCCACCAACCUGACCAUGACCUUUAACAACCAGCUGACCACUGUCCACAACCAGGCUCCCUCCUCUACCAGUGCCACUAUUUCCUUAGCCAAUCCCGAAGUCUCCAUACUAAACUACCCAUCUACACUCUACCAGCCCUCAGCGGCAUCCAUGGCUGCAGUGGCCCAGCGGAGCAUGCCCCUGCAGACAGGAACAGCCCAGAUUUGUGCCCGGCCUGACCCGUUCCAGCAAGCUCUCAUCGUGUGUCCCCCCGGCUUCCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-75.00 kcal/mol

Ensemble Metrics

Free Energy: -83.08

Frequency: 0.0000

Diversity: 67.25

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((...((((((((...)))))))).))).((.((((...(((.((.........(((((((((....((((..............(((....)))(((....(((((((.........)))..................((((..(.(((((..((....(((...((((.((.(((.(((............(((((.......(((......)))........................(((......))).....)))))))).)))...)).))))...)))..))..))))))..))))........))))..)))(((........)))...))))))))))))).)))))...)))).))..

Thermodynamic Ensemble Prediction

,(((...((((((((...)))))))).))),{|,,{({{{((((.(..........(((((((({...,((((.............,,{.{.,(({({{.....,|||||,,.......,}.....,..............((((..{.(((((..((....(((...((((.((.,,,{,(({{{{.......,(((((.......(({......,}}........................(((......))).....)))))),)})))}..)).))))...)))..))..)))))}..))))...,..,|}}}}.|||},||..,,}.....},..))))))))))))),},},))))))}}.,..)