Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HIPK2_0005400

Sequence Length

414 nt

GC Content

0.4710

GUAGACAAACAGAUUAUGUGUUACAGAAUCGAGAGGAAGGAGAGACCACUGCAGGCUGGAGGAAAACACCACUAAGACACAGCCCCUCCCUCCCAGGAGACUUUAGGCUGGAAAGACCAACUGUACUGUAAGGCAGAUUGUAACAGGAGCUGGGCUAGAAGGCUAUAUUGUACUGUGUGAUAGCAAAGGAAGGAGCAAUUCAUUUCCAUUAAUGGUGUCUGAAAGGGUUUCACAAUGGGGCAUGUGGGACCCAGGCUAGGCCUUAAAGCCCAAAGGCUUGGAGAGAAUGCUAUGGGUCAGAGAGCUUGUAUGAAGGGAAAGGCCUGUGCUCACAGUAUGCUUGGAAAACAAUGAGUAAACUAAUCUUGGUGUCAGAAGAGUGGAGAGCAGAGGGAGAUAAGUCUAGAAGGUAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-99.60 kcal/mol

Ensemble Metrics

Free Energy: -108.54

Frequency: 0.0000

Diversity: 112.20

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((((.....((((.(((...))).))))........(.((......)).).(((((.....................))))).(((((((((((...........)))).....((((.((((((((..((((........((((...((((((..((((((((((......))))((((.(((((((((((.....)).))))).))..)).)))).....((((((((((........))))))))))......))))))..))))))....)))).......))))..(((.((.((.((((............)))))).))))))))))))).))))..........((...(((.((((........)))).)))...)).)))))))....))))).........

Thermodynamic Ensemble Prediction

.(((((...,.{({,.{(|...))}.,}}}....,,..{......||.}}.|.(((((..,................,.))))).(((((((((((,...,,,,.,,||}}.....||{,{(((,((({..,{{|,.{{,,..{{|(,,,((((((..((((((,,,,......}|,}((((.({,,(((((((,...,)).})))).,,..}).}}}}.....((((((((((.,,...,,))))))))))..,,..))))))..)))))}..,})))}..,,,.,||||.{(((.((.((.((((........,...)))))).)))))),))))}|||||,.......,,}}}...||,.||||},..,,..,,}),}}}.,.}},)))))))....))))).........