Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HIPK2_0007300

Sequence Length

602 nt

GC Content

0.3904

GUGUGAGCCACCAUCCCCAGCCACAGUUUCCUUAGACAUAUGAAGAGCUGGGUGGCAAUGUCCAGAAUCUCAAUUCAGAAUGCAGAUCAGGGGGACUCUUUGAGUCUGGCAACCCCAACCCGCCCGGAAAAACAAACAGCCUUGUAGGACAACAGCCUUUUAGGACUUGAACCUUCUCAGGCCCGCCUCUCAAAACAAUAUGACUUGAAAAUGUUUAGUUUUUCUUGUAUUGUCUCACUUGCCAAACCUCCGAAAGCAAUUUGAGAGUAAUUUCAACCACAUCUUUUAGCAGGCCUUGUGAAAAAUAAAUUUAACAGGUUAAUUGUGUGCCGUUUUGAUUUGUCUUGGCAUCUCAAUAAGUAAAAGGUUAAAAUCAUGGCCACAAAAAGUAAAUAAAGCUUGAUUAUUCCAGUUGAAAAUUCAUCCAUGGGUACUCUAGUGCCUGGCUUUCGUGUUGACCUCAUUGCCAUAUGACCACCAUCAAUAGCUCUUUAUAUUUAAUUAAUUUCCUAAAAAAACCACACUCACACAUUUGUAAUGUUUGUAAUCUUUUUAUUCCAUGAUAAUUGAUGUAGCCUAGCGUAAUUGUAGUUUUUGUGUGU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-118.80 kcal/mol

Ensemble Metrics

Free Energy: -131.49

Frequency: 0.0000

Diversity: 179.29

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((....................((((....))))(((((((((((((((((((((((((.(((....(((.((((((((((.((..(((((((((...)))))......))))...((....))..........(((((...(((.(....))))...))).))..(((((((.((((((.(((((((((((((((((((...(((((........)))))))))))))).....((((.............)))))))))))).....................)).)))).)).))..............)))))....)).)).)))))))).)))))).)))))........((((.(((((((......((((...............((((.((....)).))))..............((((((....))))))))))......)))))))..))))....)).))))).....)))))))))))))......................))))).((((((......(((...((((.....))))..))).((((((.((((......))))))))))......)))))).

Thermodynamic Ensemble Prediction

(((((.{,...........},....(((,....|}}}((((((((((((((((((({((({({.(,{(((((........}}.))))}.|||((((((...)))))|{{{,...,,...,,....||,...{{{,.,,{{,{||.(((.{{,,{{{{|...,||.{{{{{.,,,..}})))}}...{{{((((,{((((({{{...(((((,.....}}))))))}))))))).....||||,........,,,,|}},,}}}}||}...|{{{{{,..........,|{.|((({{((.{{,......})}.))))))}..{((((.(((({{{((((((..((({,........}}})....}))}}}))},.,})))))))}............|||,||....,,.,)))}}},..,,......((((((....)))))))))),,,,,}))).))}}}})))))}.}|.}}}}).....)))))))))))))......................))))).((((((...,,.(((,..({{(.....}}}}..,},.||||{,,||{{......)))),}}}))......)))))).