Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HIPK2_0014100

Sequence Length

284 nt

GC Content

0.4507

AUUUAUAGGGCUCUGACAAAAACCAGCAUGUACGUUUUUGAAACUGUACAGAAAGACAGCAAGUUACACCUUCCUGAAUUCUGUGUCACGGCAUCUACUCACCAGAAUCUGAGCGGAUAGCAGGGACUUCUGGAGGAUAAAGAGGAAAUUGAGGCUUAGAGAUAUGAAAUAAUGUAUGCAAGGACUCAUAACAAGUAAUUGGUAGAGCCAGAGUUUGAACCUCAGUCCACUUGUCGCCAGCGCAUGCCCUUAUCUUCACUGGCAGGCCACCCUGCUUCUUGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-64.40 kcal/mol

Ensemble Metrics

Free Energy: -69.65

Frequency: 0.0002

Diversity: 52.51

Structure Visualization

Structure Prediction

MFE Structure Prediction

((....(((((..((.(((((((..........))))))).......((((((...(((.(((......))).)))..))))))(((...((((((.((((........)))).)))).))...)))..((((..(((((.(.(((..((((((.(((((.((((......))))......((.(((.((.(((....))).)))))))....))))).))))))))).)))))).))))..)).))))).))((.((..((((((....))))))...)).))

Thermodynamic Ensemble Prediction

((....(((((..{{.(((((((..........))))))).....,,((((((...(((.(((......))).)))..))))))(({..,(({{{{.((({..,,,,,,|}}|,}}}}.))..,))},,|{{{..((({{{(.(((..((((((.(((((.((((......}}))......((.(((.{,.(((....))).,})))))....))))).))))))))).)))))).)))).,},.))))).))((.((..((((((....))))))...)).))