Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_IARS_0011600

Sequence Length

352 nt

GC Content

0.4063

GAAUAUGAAAUUGAUAAGACACUGGGAAUCAGAGGACCAGAGGAUGUGGCCAAAAUGGGGAUUACAGAGUAUAACAAUCAGUGCCGAGCAAUUGUGAUGAGAUAUUCUGCUGAGUGGAAGGAUGUUCAAGAUCCUUCAGUAUUUGUAACUUUCCCUUUGGAAGAAGAUGAAACUGUAUCUUUAGUUGCUUGGACAACCACUCCCUGGACUCUACCUAGUAACCUUGCUGUGUGUGUUAAUCCAGAAAUGCAAUAUGUGAAAAUUAAAGUGAUGGCCAAAAAAUGAGCAAACGGAAAAAGAAUUAUCCAGAUCCAGUUUCCAUCAUCCAGAAGUAUGGUGCUGAUGCCCUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-72.30 kcal/mol

Ensemble Metrics

Free Energy: -81.36

Frequency: 0.0000

Diversity: 103.31

Structure Visualization

Structure Prediction

MFE Structure Prediction

((..(((((((((.......((((((....((((..((((.(((.(((((((...))).((((............)))).((.(((((((((((.((((...(((((....)))))(((((((.......)))))))(((.(((((...(((((....)))))...)))))))).))))..)))))))))))))..))))))))))).)))).))))))....((((....((((((........))))))....))))........((....((((.....)).))..))(((..........))).....)))))).)))..))(.((.....((.((....)))))).)

Thermodynamic Ensemble Prediction

{(..{((({{(((.......((((((....((((..((((.(((.(((((({,...||{{{,{,{,{{{{{,..,,,||,{({({{{||{{|{|.,,,|,,||||||||..||||,(((((((.......))))))),||.|||||...{{|||,.,,))}}|{{{{{|......)))))))}|||}}}}})})..))))))))))).)))).))))))....{{((,,,,(((({{....,,..}}}))},,,.}},.........{{,,{,({{{.....}}.}),.,,(((.,.....,,.)))...,,)))))))})),,)}(.{{....,|{.{(..,.))}})).)